3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAG_028 not in the Motif Atlas
Homologous match to J3_4V88_039
Geometric discrepancy: 0.1687
The information below is about J3_4V88_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_47248.1
Basepair signature
cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

3JAG|1|9|U|1340
3JAG|1|9|C|1341
3JAG|1|9|U|1342
3JAG|1|9|U|1343
3JAG|1|9|A|1344
3JAG|1|9|G|1345
*
3JAG|1|9|C|1384
3JAG|1|9|G|1385
3JAG|1|9|A|1386
3JAG|1|9|G|1387
3JAG|1|9|A|1388
3JAG|1|9|C|1389
*
3JAG|1|9|G|1481
3JAG|1|9|C|1482
3JAG|1|9|A|1483
3JAG|1|9|A|1484
3JAG|1|9|U|1485
3JAG|1|9|A|1486

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain CC
uS5
Chain DD
uS3
Chain QQ
uS9
Chain RR
eS17
Chain UU
uS10
Chain dd
uS14

Coloring options:


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