J3_3JAG_031

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

3JAG|1|9|U|1535, 3JAG|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAG_031 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.1697

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

3JAG|1|9|C|1532
3JAG|1|9|A|1533
3JAG|1|9|C|1534
3JAG|1|9|U|1535
3JAG|1|9|G|1536
*
3JAG|1|9|C|1597
3JAG|1|9|G|1598
3JAG|1|9|U|1599
3JAG|1|9|G|1600
3JAG|1|9|A|1601
3JAG|1|9|U|1602
3JAG|1|9|G|1603
3JAG|1|9|G|1604
*
3JAG|1|9|C|1635
3JAG|1|9|G|1636
3JAG|1|9|A|1637
3JAG|1|9|G|1638

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25