#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11break 12 13 14 151-152-34-145-66-137-811-1213-15
1 J3_4V88_0414V880.24402A6 SSU rRNAC1533G1534U1535G1536C1537U1538G1540*C1571G1572A1573G1574*C1470A1471C1472G1474cWWtWHcWWcWWncsS
2 J3_6CZR_0266CZR0.000021a SSU rRNAC1278C1279C1280A1281G1282U1283C1285*G1316C1317C1318G1319*C1219A1220A1221G1223cWWncSHncSHtWHcWWcWWcsS
3 J3_4LFB_0094LFB0.15502A SSU rRNAC1296C1297C1298A1299G1300U1301C1303*G1334C1335C1336G1337*C1237A1238A1239G1241cWWcSHntHHncSHtWHcWWcWWncsS
4 J3_5J7L_0115J7L0.19132AA SSU rRNAC1296G1297U1298A1299G1300U1301C1303*G1334U1335C1336G1337*C1237A1238A1239G1241cWWcSHtWHcWWcWWncsS
5 J3_8C3A_0448C3A0.22422CM SSU rRNAC1520G1521U1522G1523C1524U1525G1527*C1558G1559A1560G1561*C1456A1457C1458G1460cWWncSHncSHtWHcWWcWWncsS

3D structures

Complete motif including flanking bases
SequenceCounts
CACUG*CGUGCUGG*CGAG2
CAAUG*CCCAGUUC*GCCG2
CAAUG*CGUAGUCC*GUCG1
Non-Watson-Crick part of the motif
SequenceCounts
ACU*GUGCUG*GA2
AAU*CCAGUU*CC2
AAU*GUAGUC*UC1

Release history

Release3.803.813.823.833.843.853.863.873.883.89
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
    Heat map statistics
    Min 0.15 | Avg 0.18 | Max 0.33
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