Motif J3_37047.3 Version J3_37047.3 of this group appears in releases 3.80 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 1-15 | 2-3 | 4-14 | 5-6 | 6-13 | 7-8 | 11-12 | 13-15 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_4V88_041 | 4V88 | 0.2440 | 2 | A6 | SSU rRNA | C | 1533 | G | 1534 | U | 1535 | G | 1536 | C | 1537 | U | 1538 | G | 1540 | * | C | 1571 | G | 1572 | A | 1573 | G | 1574 | * | C | 1470 | A | 1471 | C | 1472 | G | 1474 | cWW | tWH | cWW | cWW | ncsS | |||
2 | J3_6CZR_026 | 6CZR | 0.0000 | 2 | 1a | SSU rRNA | C | 1278 | C | 1279 | C | 1280 | A | 1281 | G | 1282 | U | 1283 | C | 1285 | * | G | 1316 | C | 1317 | C | 1318 | G | 1319 | * | C | 1219 | A | 1220 | A | 1221 | G | 1223 | cWW | ncSH | ncSH | tWH | cWW | cWW | csS | |
3 | J3_4LFB_009 | 4LFB | 0.1550 | 2 | A | SSU rRNA | C | 1296 | C | 1297 | C | 1298 | A | 1299 | G | 1300 | U | 1301 | C | 1303 | * | G | 1334 | C | 1335 | C | 1336 | G | 1337 | * | C | 1237 | A | 1238 | A | 1239 | G | 1241 | cWW | cSH | ntHH | ncSH | tWH | cWW | cWW | ncsS |
4 | J3_5J7L_011 | 5J7L | 0.1913 | 2 | AA | SSU rRNA | C | 1296 | G | 1297 | U | 1298 | A | 1299 | G | 1300 | U | 1301 | C | 1303 | * | G | 1334 | U | 1335 | C | 1336 | G | 1337 | * | C | 1237 | A | 1238 | A | 1239 | G | 1241 | cWW | cSH | tWH | cWW | cWW | ncsS | ||
5 | J3_8C3A_044 | 8C3A | 0.2242 | 2 | CM | SSU rRNA | C | 1520 | G | 1521 | U | 1522 | G | 1523 | C | 1524 | U | 1525 | G | 1527 | * | C | 1558 | G | 1559 | A | 1560 | G | 1561 | * | C | 1456 | A | 1457 | C | 1458 | G | 1460 | cWW | ncSH | ncSH | tWH | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CACUG*CGUGCUGG*CGAG | 2 |
CAAUG*CCCAGUUC*GCCG | 2 |
CAAUG*CGUAGUCC*GUCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
ACU*GUGCUG*GA | 2 |
AAU*CCAGUU*CC | 2 |
AAU*GUAGUC*UC | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Heat map statistics
- Min 0.15 | Avg 0.18 | Max 0.33
Coloring options: