3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GUC*GCCUCACGAUCC*GGUGUC
Length
21 nucleotides
Bulged bases
3JAG|1|5|C|4337, 3JAG|1|5|U|4374
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAG_039 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.079
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

3JAG|1|5|G|4228
3JAG|1|5|U|4229
3JAG|1|5|C|4230
*
3JAG|1|5|G|4331
3JAG|1|5|C|4332
3JAG|1|5|C|4333
3JAG|1|5|U|4334
3JAG|1|5|C|4335
3JAG|1|5|A|4336
3JAG|1|5|C|4337
3JAG|1|5|G|4338
3JAG|1|5|A|4339
3JAG|1|5|U|4340
3JAG|1|5|C|4341
3JAG|1|5|C|4342
*
3JAG|1|5|G|4370
3JAG|1|5|G|4371
3JAG|1|5|U|4372
3JAG|1|5|G|4373
3JAG|1|5|U|4374
3JAG|1|5|C|4375

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain Q
eL18
Chain T
eL21
Chain a
uL15
Chain o
eL42

Coloring options:


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