J3_3JAH_028

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAH_028 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1197

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3JAH|1|9|U|1350
3JAH|1|9|G|1351
*
3JAH|1|9|U|1360
3JAH|1|9|G|1361
3JAH|1|9|U|1362
3JAH|1|9|C|1363
*
3JAH|1|9|G|1375
3JAH|1|9|A|1376
3JAH|1|9|U|1377
3JAH|1|9|A|1378
3JAH|1|9|A|1379

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

uS2

Chain CC

uS5

Chain RR

eS17