J3_8P9A_081

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8P9A|1|sR|U|1293
8P9A|1|sR|G|1294
*
8P9A|1|sR|U|1303
8P9A|1|sR|G|1304
8P9A|1|sR|U|1305
8P9A|1|sR|C|1306
*
8P9A|1|sR|G|1318
8P9A|1|sR|A|1319
8P9A|1|sR|U|1320
8P9A|1|sR|A|1321
8P9A|1|sR|A|1322

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain s0

40S ribosomal protein S0-A

Chain s2

40S ribosomal protein S2