3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UCGGUC*GGAGU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAI_009 not in the Motif Atlas
Homologous match to J3_5TBW_010
Geometric discrepancy: 0.1368
The information below is about J3_5TBW_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_70383.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

3JAI|1|5|U|2440
3JAI|1|5|C|2441
3JAI|1|5|G|2442
3JAI|1|5|G|2443
3JAI|1|5|U|2444
3JAI|1|5|C|2445
*
3JAI|1|5|G|2515
3JAI|1|5|G|2516
3JAI|1|5|A|2517
3JAI|1|5|G|2518
3JAI|1|5|U|2519
*
3JAI|1|5|A|2536
3JAI|1|5|A|2537

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain X
uL23
Chain g
eL34
Chain k
eL38
Chain l
eL39

Coloring options:


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