J3_3JAI_019

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAI_019 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0985

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

3JAI|1|9|A|40
3JAI|1|9|G|41
*
3JAI|1|9|C|481
3JAI|1|9|G|482
3JAI|1|9|C|483
3JAI|1|9|A|484
3JAI|1|9|A|485
3JAI|1|9|A|486
3JAI|1|9|U|487
*
3JAI|1|9|A|512
3JAI|1|9|G|513
3JAI|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain jj

ABCE1