3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AGAG*CAG*CUGGAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAI_021 not in the Motif Atlas
Homologous match to J3_8P9A_073
Geometric discrepancy: 0.232
The information below is about J3_8P9A_073
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97642.1
Basepair signature
cWW-tSH-F-F-cWW-F-tWW-cWW
Number of instances in this motif group
2

Unit IDs

3JAI|1|9|A|816
3JAI|1|9|G|817
3JAI|1|9|A|818
3JAI|1|9|G|819
*
3JAI|1|9|C|829
3JAI|1|9|A|830
3JAI|1|9|G|831
*
3JAI|1|9|C|843
3JAI|1|9|U|844
3JAI|1|9|G|845
3JAI|1|9|G|846
3JAI|1|9|A|847
3JAI|1|9|U|848

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain JJ
uS4
Chain YY
eS24

Coloring options:


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