3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
3JAI|1|5|U|354, 3JAI|1|5|A|362, 3JAI|1|8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAI_033 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0645
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

3JAI|1|5|C|351
3JAI|1|5|G|352
3JAI|1|5|A|353
3JAI|1|5|U|354
3JAI|1|5|A|355
3JAI|1|5|G|356
3JAI|1|5|U|357
3JAI|1|5|C|358
3JAI|1|5|A|359
3JAI|1|5|A|360
3JAI|1|5|C|361
3JAI|1|5|A|362
3JAI|1|5|A|363
3JAI|1|5|G|364
3JAI|1|5|U|365
3JAI|1|5|A|366
3JAI|1|5|C|367
*
3JAI|1|5|G|374
3JAI|1|5|G|375
3JAI|1|5|A|376
3JAI|1|5|A|377
3JAI|1|5|A|378
3JAI|1|5|G|379
*
3JAI|1|8|C|21
3JAI|1|8|U|22
3JAI|1|8|C|23
3JAI|1|8|G|24

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain C
uL4
Chain Y
uL24
Chain j
eL37
Chain l
eL39

Coloring options:


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