3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
Length
28 nucleotides
Bulged bases
3JAI|1|5|G|409, 3JAI|1|5|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAI_034 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.29
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

3JAI|1|5|U|380
3JAI|1|5|U|381
3JAI|1|5|G|382
3JAI|1|5|A|383
3JAI|1|5|A|384
3JAI|1|5|A|385
3JAI|1|5|A|386
3JAI|1|5|G|387
3JAI|1|5|A|388
3JAI|1|5|A|389
3JAI|1|5|C|390
*
3JAI|1|5|G|401
3JAI|1|5|A|402
3JAI|1|5|G|403
3JAI|1|5|U|404
3JAI|1|5|U|405
3JAI|1|5|C|406
3JAI|1|5|A|407
3JAI|1|5|A|408
3JAI|1|5|G|409
3JAI|1|5|A|410
3JAI|1|5|G|411
3JAI|1|5|G|412
3JAI|1|5|G|413
3JAI|1|5|C|414
3JAI|1|5|G|415
*
3JAI|1|8|C|19
3JAI|1|8|A|20

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain C
uL4
Chain P
uL22
Chain Y
uL24
Chain l
eL39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3456 s