J3_3JAJ_009
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 3JAJ|1|5|U|2788, 3JAJ|1|5|A|2789, 3JAJ|1|5|U|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAJ_009 not in the Motif Atlas
- Geometric match to J3_4V9F_006
- Geometric discrepancy: 0.2671
- The information below is about J3_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3JAJ|1|5|G|2402
3JAJ|1|5|A|2403
3JAJ|1|5|A|2404
3JAJ|1|5|G|2405
*
3JAJ|1|5|C|2785
3JAJ|1|5|C|2786
3JAJ|1|5|A|2787
3JAJ|1|5|U|2788
3JAJ|1|5|A|2789
3JAJ|1|5|U|2790
3JAJ|1|5|C|2791
*
3JAJ|1|5|G|2800
3JAJ|1|5|U|2801
3JAJ|1|5|C|2802
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain g
- Ribosomal protein eL34
- Chain j
- Ribosomal protein eL37
- Chain l
- Ribosomal protein eL39
Coloring options: