J3_3JAJ_021
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GCUUAAUUU*GGGAAACCUCAC*GGCUGC
- Length
- 27 nucleotides
- Bulged bases
- 3JAJ|1|S2|G|1256, 3JAJ|1|S2|A|1258, 3JAJ|1|S2|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAJ_021 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.5406
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JAJ|1|S2|G|1236
3JAJ|1|S2|C|1237
3JAJ|1|S2|U|1238
3JAJ|1|S2|U|1239
3JAJ|1|S2|A|1240
3JAJ|1|S2|A|1241
3JAJ|1|S2|U|1242
3JAJ|1|S2|U|1243
3JAJ|1|S2|U|1244
*
3JAJ|1|S2|G|1255
3JAJ|1|S2|G|1256
3JAJ|1|S2|G|1257
3JAJ|1|S2|A|1258
3JAJ|1|S2|A|1259
3JAJ|1|S2|A|1260
3JAJ|1|S2|C|1261
3JAJ|1|S2|C|1262
3JAJ|1|S2|U|1263
3JAJ|1|S2|C|1264
3JAJ|1|S2|A|1265
3JAJ|1|S2|C|1266
*
3JAJ|1|S2|G|1516
3JAJ|1|S2|G|1517
3JAJ|1|S2|C|1518
3JAJ|1|S2|U|1519
3JAJ|1|S2|G|1520
3JAJ|1|S2|C|1521
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- Ribosomal protein uS19
- Chain SS
- Ribosomal protein uS13
- Chain SU
- Ribosomal protein uS10
- Chain Sd
- Ribosomal protein uS14
- Chain Sf
- Ribosomal protein eS31
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