J3_8P9A_078

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

8P9A|1|sR|G|1199, 8P9A|1|sR|G|1201, 8P9A|1|sR|A|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|C|1180
8P9A|1|sR|U|1181
8P9A|1|sR|U|1182
8P9A|1|sR|A|1183
8P9A|1|sR|A|1184
8P9A|1|sR|U|1185
8P9A|1|sR|U|1186
8P9A|1|sR|U|1187
*
8P9A|1|sR|G|1198
8P9A|1|sR|G|1199
8P9A|1|sR|G|1200
8P9A|1|sR|G|1201
8P9A|1|sR|A|1202
8P9A|1|sR|A|1203
8P9A|1|sR|A|1204
8P9A|1|sR|C|1205
8P9A|1|sR|U|1206
8P9A|1|sR|C|1207
8P9A|1|sR|A|1208
8P9A|1|sR|C|1209
*
8P9A|1|sR|G|1454
8P9A|1|sR|G|1455
8P9A|1|sR|C|1456
8P9A|1|sR|C|1457
8P9A|1|sR|G|1458

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain c8

40S ribosomal protein S18-A

Chain d0

Small ribosomal subunit protein uS10

Chain d9

Small ribosomal subunit protein uS14A

Chain sM

Suppressor protein STM1