J3_3JAM_007
3D structure
- PDB id
- 3JAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAM_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1311
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JAM|1|2|U|1167
3JAM|1|2|G|1168
3JAM|1|2|G|1169
3JAM|1|2|A|1170
*
3JAM|1|2|U|1466
3JAM|1|2|A|1467
3JAM|1|2|C|1468
*
3JAM|1|2|G|1572
3JAM|1|2|G|1573
3JAM|1|2|A|1574
3JAM|1|2|A|1575
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- uS7
- Chain Q
- uS9
- Chain S
- uS13
- Chain T
- eS19
Coloring options: