J3_3JAM_010
3D structure
- PDB id
- 3JAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAM_010 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1014
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JAM|1|2|U|1282
3JAM|1|2|C|1283
3JAM|1|2|U|1284
3JAM|1|2|U|1285
3JAM|1|2|A|1286
3JAM|1|2|G|1287
*
3JAM|1|2|C|1326
3JAM|1|2|G|1327
3JAM|1|2|A|1328
3JAM|1|2|G|1329
3JAM|1|2|A|1330
3JAM|1|2|C|1331
*
3JAM|1|2|G|1417
3JAM|1|2|C|1418
3JAM|1|2|A|1419
3JAM|1|2|A|1420
3JAM|1|2|U|1421
3JAM|1|2|A|1422
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- uS5
- Chain D
- uS3
- Chain Q
- uS9
- Chain R
- eS17
- Chain U
- uS10
- Chain d
- uS14
Coloring options: