J3_3JAM_014

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

3JAM|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAM_014 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.07

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JAM|1|2|A|41
3JAM|1|2|G|42
3JAM|1|2|A|43
3JAM|1|2|U|44
3JAM|1|2|U|45
3JAM|1|2|A|46
3JAM|1|2|A|47
3JAM|1|2|G|48
*
3JAM|1|2|C|430
3JAM|1|2|G|431
3JAM|1|2|C|432
3JAM|1|2|G|433
3JAM|1|2|C|434
3JAM|1|2|A|435
3JAM|1|2|A|436
3JAM|1|2|A|437
3JAM|1|2|U|438
*
3JAM|1|2|A|463
3JAM|1|2|G|464
3JAM|1|2|U|465

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain X

uS12