J3_8P9A_069

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8P9A|1|sR|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|A|41
8P9A|1|sR|G|42
8P9A|1|sR|A|43
8P9A|1|sR|U|44
8P9A|1|sR|U|45
8P9A|1|sR|A|46
8P9A|1|sR|A|47
8P9A|1|sR|G|48
*
8P9A|1|sR|C|431
8P9A|1|sR|G|432
8P9A|1|sR|C|433
8P9A|1|sR|G|434
8P9A|1|sR|C|435
8P9A|1|sR|A|436
8P9A|1|sR|A|437
8P9A|1|sR|A|438
8P9A|1|sR|U|439
*
8P9A|1|sR|A|464
8P9A|1|sR|G|465
8P9A|1|sR|U|466

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s8

40S ribosomal protein S8-A

Chain s9

40S ribosomal protein S9-A