J3_3JAN_003

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAGCG*CGUACG*CGG

Length

14 nucleotides

Bulged bases

3JAN|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|C|112
3JAN|1|5|A|113
3JAN|1|5|G|114
3JAN|1|5|C|115
3JAN|1|5|G|116
*
3JAN|1|5|C|155
3JAN|1|5|G|156
3JAN|1|5|U|157
3JAN|1|5|A|158
3JAN|1|5|C|159
3JAN|1|5|G|160
*
3JAN|1|5|C|276
3JAN|1|5|G|277
3JAN|1|5|G|278

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eL8

Chain L

Ribosomal protein eL13

Chain N

Ribosomal protein eL15

Chain h

Ribosomal protein uL29

Chain i

Ribosomal protein eL36