J3_3JAN_005

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3JAN|1|5|A|1534, 3JAN|1|5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|U|1531
3JAN|1|5|G|1532
3JAN|1|5|A|1533
3JAN|1|5|A|1534
3JAN|1|5|C|1535
3JAN|1|5|U|1536
3JAN|1|5|A|1537
*
3JAN|1|5|U|1622
3JAN|1|5|A|1623
3JAN|1|5|G|1624
*
3JAN|1|5|C|1640
3JAN|1|5|G|1641
3JAN|1|5|A|1642
3JAN|1|5|A|1643

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain N

Ribosomal protein eL15

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39