J3_3JAN_013

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

3JAN|1|5|U|4988, 3JAN|1|5|C|4990, 3JAN|1|5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|C|4970
3JAN|1|5|A|4971
3JAN|1|5|U|4972
*
3JAN|1|5|G|4986
3JAN|1|5|C|4987
3JAN|1|5|U|4988
3JAN|1|5|U|4989
3JAN|1|5|C|4990
3JAN|1|5|U|4991
*
3JAN|1|5|A|5060
3JAN|1|5|A|5061
3JAN|1|5|G|5062
3JAN|1|5|G|5063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 4

Signal recognition particle RNA; SRP RNA

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22

Chain d

Ribosomal protein eL31