J3_3JAN_018
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGACUG*UUCCG*CAAAGUCUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 3JAN|1|S2|C|1138, 3JAN|1|S2|A|1150, 3JAN|1|S2|C|1153, 3JAN|1|S2|U|1155, 3JAN|1|S2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAN|1|S2|C|1091
3JAN|1|S2|G|1092
3JAN|1|S2|A|1093
3JAN|1|S2|C|1094
3JAN|1|S2|U|1095
3JAN|1|S2|G|1096
*
3JAN|1|S2|U|1136
3JAN|1|S2|U|1137
3JAN|1|S2|C|1138
3JAN|1|S2|C|1139
3JAN|1|S2|G|1140
*
3JAN|1|S2|C|1147
3JAN|1|S2|A|1148
3JAN|1|S2|A|1149
3JAN|1|S2|A|1150
3JAN|1|S2|G|1151
3JAN|1|S2|U|1152
3JAN|1|S2|C|1153
3JAN|1|S2|U|1154
3JAN|1|S2|U|1155
3JAN|1|S2|U|1156
3JAN|1|S2|G|1157
3JAN|1|S2|G|1158
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SA
- Ribosomal protein uS2
- Chain SC
- Ribosomal protein uS5
- Chain SL
- Ribosomal protein uS17
- Chain SN
- Ribosomal protein uS15
- Chain SV
- Ribosomal protein eS21
- Chain SW
- Ribosomal protein uS8
- Chain SX
- Ribosomal protein uS12
- Chain Sa
- Ribosomal protein eS26
- Chain Sb
- Ribosomal protein eS27
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