3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CCAGG*CCAGUAA*UGAUUAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|C|1218
3JAN|1|S2|C|1219
3JAN|1|S2|A|1220
3JAN|1|S2|G|1221
3JAN|1|S2|G|1222
*
3JAN|1|S2|C|1645
3JAN|1|S2|C|1646
3JAN|1|S2|A|1647
3JAN|1|S2|G|1648
3JAN|1|S2|U|1649
3JAN|1|S2|A|1650
3JAN|1|S2|A|1651
*
3JAN|1|S2|U|1673
3JAN|1|S2|G|1674
3JAN|1|S2|A|1675
3JAN|1|S2|U|1676
3JAN|1|S2|U|1677
3JAN|1|S2|A|1678
3JAN|1|S2|A|1679
3JAN|1|S2|G|1680

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SF
Ribosomal protein uS7
Chain SQ
Ribosomal protein uS9
Chain SR
Ribosomal protein eS17
Chain Sc
Ribosomal protein eS28

Coloring options:

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