J3_3JAN_024

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UGUCUGG*CCGAUAA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|1350
3JAN|1|S2|G|1351
*
3JAN|1|S2|U|1360
3JAN|1|S2|G|1361
3JAN|1|S2|U|1362
3JAN|1|S2|C|1363
3JAN|1|S2|U|1364
3JAN|1|S2|G|1365
3JAN|1|S2|G|1366
*
3JAN|1|S2|C|1373
3JAN|1|S2|C|1374
3JAN|1|S2|G|1375
3JAN|1|S2|A|1376
3JAN|1|S2|U|1377
3JAN|1|S2|A|1378
3JAN|1|S2|A|1379

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Ribosomal protein uS2

Chain SC

Ribosomal protein uS5

Chain SR

Ribosomal protein eS17

Chain Sa

Ribosomal protein eS26