3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CUGGCAUGC*GAGGGAC*GAUUG
Length
21 nucleotides
Bulged bases
3JAN|1|S2|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|C|1391
3JAN|1|S2|U|1392
3JAN|1|S2|G|1393
3JAN|1|S2|G|1394
3JAN|1|S2|C|1395
3JAN|1|S2|A|1396
3JAN|1|S2|U|1397
3JAN|1|S2|G|1398
3JAN|1|S2|C|1399
*
3JAN|1|S2|G|1447
3JAN|1|S2|A|1448
3JAN|1|S2|G|1449
3JAN|1|S2|G|1450
3JAN|1|S2|G|1451
3JAN|1|S2|A|1452
3JAN|1|S2|C|1453
*
3JAN|1|S2|G|1475
3JAN|1|S2|A|1476
3JAN|1|S2|U|1477
3JAN|1|S2|U|1478
3JAN|1|S2|G|1479

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
Ribosomal protein uS3
Chain SF
Ribosomal protein uS7
Chain SQ
Ribosomal protein uS9
Chain SR
Ribosomal protein eS17
Chain SU
Ribosomal protein uS10
Chain Sd
Ribosomal protein uS14
Chain Sg
Ribosomal protein RACK1

Coloring options:

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