J3_3JAN_032

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCAG*CGUAGC*GUCCGAC

Length

17 nucleotides

Bulged bases

3JAN|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|1545
3JAN|1|5|C|1546
3JAN|1|5|A|1547
3JAN|1|5|G|1548
*
3JAN|1|5|C|1580
3JAN|1|5|G|1581
3JAN|1|5|U|1582
3JAN|1|5|A|1583
3JAN|1|5|G|1584
3JAN|1|5|C|1585
*
3JAN|1|5|G|1608
3JAN|1|5|U|1609
3JAN|1|5|C|1610
3JAN|1|5|C|1611
3JAN|1|5|G|1612
3JAN|1|5|A|1613
3JAN|1|5|C|1614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain R

Ribosomal protein eL19

Chain g

Ribosomal protein eL34

Chain j

Ribosomal protein eL37

Chain p

Ribosomal protein eL43