3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GAAG*CCAUAUCC*GGUC
Length
16 nucleotides
Bulged bases
3JAN|1|5|U|2788, 3JAN|1|5|A|2789, 3JAN|1|5|U|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|5|G|2402
3JAN|1|5|A|2403
3JAN|1|5|A|2404
3JAN|1|5|G|2405
*
3JAN|1|5|C|2785
3JAN|1|5|C|2786
3JAN|1|5|A|2787
3JAN|1|5|U|2788
3JAN|1|5|A|2789
3JAN|1|5|U|2790
3JAN|1|5|C|2791
3JAN|1|5|C|2792
*
3JAN|1|5|G|2799
3JAN|1|5|G|2800
3JAN|1|5|U|2801
3JAN|1|5|C|2802

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain g
Ribosomal protein eL34
Chain j
Ribosomal protein eL37
Chain l
Ribosomal protein eL39

Coloring options:

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