J3_3JAN_037

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGCACGG*CUGACCCGGUGAGGC*GCUCCGGGGACAGUGCC

Length

39 nucleotides

Bulged bases

3JAN|1|5|G|4084, 3JAN|1|5|G|4086, 3JAN|1|5|G|4087, 3JAN|1|5|C|4162, 3JAN|1|5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|3933
3JAN|1|5|G|3934
3JAN|1|5|C|3935
3JAN|1|5|A|3936
3JAN|1|5|C|3937
3JAN|1|5|G|3938
3JAN|1|5|G|3939
*
3JAN|1|5|C|4074
3JAN|1|5|U|4075
3JAN|1|5|G|4076
3JAN|1|5|A|4077
3JAN|1|5|C|4078
3JAN|1|5|C|4079
3JAN|1|5|C|4080
3JAN|1|5|G|4081
3JAN|1|5|G|4082
3JAN|1|5|U|4083
3JAN|1|5|G|4084
3JAN|1|5|A|4085
3JAN|1|5|G|4086
3JAN|1|5|G|4087
3JAN|1|5|C|4088
*
3JAN|1|5|G|4161
3JAN|1|5|C|4162
3JAN|1|5|U|4163
3JAN|1|5|C|4164
3JAN|1|5|C|4165
3JAN|1|5|G|4166
3JAN|1|5|G|4167
3JAN|1|5|G|4168
3JAN|1|5|G|4169
3JAN|1|5|A|4170
3JAN|1|5|C|4171
3JAN|1|5|A|4172
3JAN|1|5|G|4173
3JAN|1|5|U|4174
3JAN|1|5|G|4175
3JAN|1|5|C|4176
3JAN|1|5|C|4177

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

Ribosomal protein uL2

Chain G

Ribosomal protein eL8

Chain N

Ribosomal protein eL15

Chain X

Ribosomal protein uL23

Chain i

Ribosomal protein eL36