J3_3JAN_040
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UCGGUUG*CCUUCGUCCU*GUCACGCACGCCGUUCGUGG
- Length
- 37 nucleotides
- Bulged bases
- 3JAN|1|5|C|4883, 3JAN|1|5|C|4937, 3JAN|1|5|C|4939, 3JAN|1|5|G|4951
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAN|1|5|U|4748
3JAN|1|5|C|4749
3JAN|1|5|G|4750
3JAN|1|5|G|4751
3JAN|1|5|U|4752
3JAN|1|5|U|4753
3JAN|1|5|G|4754
*
3JAN|1|5|C|4879
3JAN|1|5|C|4880
3JAN|1|5|U|4881
3JAN|1|5|U|4882
3JAN|1|5|C|4883
3JAN|1|5|G|4884
3JAN|1|5|U|4885
3JAN|1|5|C|4886
3JAN|1|5|C|4887
3JAN|1|5|U|4888
*
3JAN|1|5|G|4931
3JAN|1|5|U|4932
3JAN|1|5|C|4933
3JAN|1|5|A|4934
3JAN|1|5|C|4935
3JAN|1|5|G|4936
3JAN|1|5|C|4937
3JAN|1|5|A|4938
3JAN|1|5|C|4939
3JAN|1|5|G|4941
3JAN|1|5|C|4942
3JAN|1|5|C|4944
3JAN|1|5|G|4945
3JAN|1|5|U|4946
3JAN|1|5|U|4947
3JAN|1|5|C|4948
3JAN|1|5|G|4949
3JAN|1|5|U|4950
3JAN|1|5|G|4951
3JAN|1|5|G|4952
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein eL6
- Chain M
- Ribosomal protein eL14
- Chain O
- Ribosomal protein uL13
- Chain f
- Ribosomal protein eL33
Coloring options: