J3_3JAP_001

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAP_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1278

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

3JAP|1|2|A|41
3JAP|1|2|G|42
*
3JAP|1|2|C|432
3JAP|1|2|G|433
3JAP|1|2|C|434
3JAP|1|2|A|435
3JAP|1|2|A|436
3JAP|1|2|A|437
3JAP|1|2|U|438
*
3JAP|1|2|A|463
3JAP|1|2|G|464
3JAP|1|2|U|465

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain X

uS12

Chain q

eIF3i