J3_3JAP_004
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 3JAP|1|2|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAP_004 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.3718
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JAP|1|2|C|1036
3JAP|1|2|U|1037
3JAP|1|2|A|1038
*
3JAP|1|2|U|1078
3JAP|1|2|U|1079
3JAP|1|2|A|1080
3JAP|1|2|C|1081
3JAP|1|2|G|1082
*
3JAP|1|2|C|1089
3JAP|1|2|A|1090
3JAP|1|2|A|1091
3JAP|1|2|A|1092
3JAP|1|2|G|1093
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- uS2
- Chain V
- eS21
- Chain W
- uS8
- Chain a
- eS26
- Chain b
- eS27
Coloring options: