J3_3JAP_009

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

3JAP|1|2|U|1284

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAP_009 not in the Motif Atlas

Homologous match to J3_4V88_039

Geometric discrepancy: 0.2399

The information below is about J3_4V88_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47248.1

Basepair signature

cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

3JAP|1|2|U|1282
3JAP|1|2|C|1283
3JAP|1|2|U|1284
3JAP|1|2|U|1285
3JAP|1|2|A|1286
3JAP|1|2|G|1287
*
3JAP|1|2|C|1326
3JAP|1|2|G|1327
3JAP|1|2|A|1328
3JAP|1|2|G|1329
3JAP|1|2|A|1330
3JAP|1|2|C|1331
*
3JAP|1|2|G|1417
3JAP|1|2|C|1418
3JAP|1|2|A|1419
3JAP|1|2|A|1420
3JAP|1|2|U|1421
3JAP|1|2|A|1422

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain D

uS3

Chain Q

uS9

Chain R

eS17

Chain U

uS10

Chain d

uS14

Chain i

eIF1A