J3_3JAP_011
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 3JAP|1|2|U|1411, 3JAP|1|2|U|1412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAP_011 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.2098
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3JAP|1|2|A|1335
3JAP|1|2|A|1336
3JAP|1|2|C|1337
*
3JAP|1|2|G|1384
3JAP|1|2|G|1385
3JAP|1|2|A|1386
3JAP|1|2|C|1387
*
3JAP|1|2|G|1410
3JAP|1|2|U|1411
3JAP|1|2|U|1412
3JAP|1|2|U|1413
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- uS7
- Chain Q
- uS9
- Chain R
- eS17
- Chain U
- uS10
- Chain d
- uS14
- Chain g
- RACK1
Coloring options: