J3_3JAP_015

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AAC*GGACUA*UGGAAGUUU

Length

18 nucleotides

Bulged bases

3JAP|1|2|U|1411, 3JAP|1|2|U|1412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAP_015 not in the Motif Atlas

Homologous match to J3_8C3A_086

Geometric discrepancy: 0.2003

The information below is about J3_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_80847.1

Basepair signature

cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

3JAP|1|2|A|1335
3JAP|1|2|A|1336
3JAP|1|2|C|1337
*
3JAP|1|2|G|1384
3JAP|1|2|G|1385
3JAP|1|2|A|1386
3JAP|1|2|C|1387
3JAP|1|2|U|1388
3JAP|1|2|A|1389
*
3JAP|1|2|U|1405
3JAP|1|2|G|1406
3JAP|1|2|G|1407
3JAP|1|2|A|1408
3JAP|1|2|A|1409
3JAP|1|2|G|1410
3JAP|1|2|U|1411
3JAP|1|2|U|1412
3JAP|1|2|U|1413

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain R

eS17

Chain U

uS10

Chain d

uS14

Chain g

RACK1