J3_3JAQ_009
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAQ_009 not in the Motif Atlas
- Geometric match to J3_8CRE_082
- Geometric discrepancy: 0.2605
- The information below is about J3_8CRE_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04315.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JAQ|1|2|U|1281
3JAQ|1|2|U|1282
3JAQ|1|2|C|1283
3JAQ|1|2|U|1284
3JAQ|1|2|U|1285
3JAQ|1|2|A|1286
3JAQ|1|2|G|1287
*
3JAQ|1|2|C|1326
3JAQ|1|2|G|1327
3JAQ|1|2|A|1328
3JAQ|1|2|G|1329
3JAQ|1|2|A|1330
3JAQ|1|2|C|1331
*
3JAQ|1|2|G|1417
3JAQ|1|2|C|1418
3JAQ|1|2|A|1419
3JAQ|1|2|A|1420
3JAQ|1|2|U|1421
3JAQ|1|2|A|1422
3JAQ|1|2|A|1423
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- uS5
- Chain D
- uS3
- Chain Q
- uS9
- Chain R
- eS17
- Chain U
- uS10
- Chain d
- uS14
Coloring options: