J3_3JAQ_011

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AAC*GGAC*GUUU

Length

11 nucleotides

Bulged bases

3JAQ|1|2|U|1411, 3JAQ|1|2|U|1412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAQ_011 not in the Motif Atlas

Homologous match to J3_8C3A_043

Geometric discrepancy: 0.1967

The information below is about J3_8C3A_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.3

Basepair signature

cWW-F-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

3JAQ|1|2|A|1335
3JAQ|1|2|A|1336
3JAQ|1|2|C|1337
*
3JAQ|1|2|G|1384
3JAQ|1|2|G|1385
3JAQ|1|2|A|1386
3JAQ|1|2|C|1387
*
3JAQ|1|2|G|1410
3JAQ|1|2|U|1411
3JAQ|1|2|U|1412
3JAQ|1|2|U|1413

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain R

eS17

Chain U

uS10

Chain d

uS14

Chain g

RACK1