J3_3JAQ_014

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAQ_014 not in the Motif Atlas

Homologous match to J3_8CRE_075

Geometric discrepancy: 0.1843

The information below is about J3_8CRE_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

3JAQ|1|2|A|760
3JAQ|1|2|G|761
3JAQ|1|2|A|762
3JAQ|1|2|G|763
*
3JAQ|1|2|C|773
3JAQ|1|2|A|774
3JAQ|1|2|G|775
*
3JAQ|1|2|U|784
3JAQ|1|2|C|785
3JAQ|1|2|G|786
3JAQ|1|2|A|787
3JAQ|1|2|A|788
3JAQ|1|2|U|789

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24