J3_3JAQ_018
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 3JAQ|1|2|U|1411, 3JAQ|1|2|U|1412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAQ_018 not in the Motif Atlas
- Homologous match to J3_8CRE_085
- Geometric discrepancy: 0.144
- The information below is about J3_8CRE_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3JAQ|1|2|A|1335
3JAQ|1|2|A|1336
3JAQ|1|2|C|1337
*
3JAQ|1|2|G|1384
3JAQ|1|2|G|1385
3JAQ|1|2|A|1386
3JAQ|1|2|C|1387
3JAQ|1|2|U|1388
3JAQ|1|2|A|1389
*
3JAQ|1|2|U|1405
3JAQ|1|2|G|1406
3JAQ|1|2|G|1407
3JAQ|1|2|A|1408
3JAQ|1|2|A|1409
3JAQ|1|2|G|1410
3JAQ|1|2|U|1411
3JAQ|1|2|U|1412
3JAQ|1|2|U|1413
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- uS7
- Chain Q
- uS9
- Chain R
- eS17
- Chain U
- uS10
- Chain d
- uS14
- Chain g
- RACK1
Coloring options: