J3_3JB9_002
3D structure
- PDB id
- 3JB9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAU*ACUGCGACAUUG*CUUUGCCUUUUGG
- Length
- 28 nucleotides
- Bulged bases
- 3JB9|1|N|G|75, 3JB9|1|N|C|76, 3JB9|1|N|G|77, 3JB9|1|N|A|78, 3JB9|1|P|U|16, 3JB9|1|P|U|17, 3JB9|1|P|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JB9|1|N|C|49
3JB9|1|N|A|50
3JB9|1|N|U|51
*
3JB9|1|N|A|72
3JB9|1|N|C|73
3JB9|1|N|U|74
3JB9|1|N|G|75
3JB9|1|N|C|76
3JB9|1|N|G|77
3JB9|1|N|A|78
3JB9|1|N|C|79
3JB9|1|N|A|80
3JB9|1|N|U|81
3JB9|1|N|U|82
3JB9|1|N|G|83
*
3JB9|1|P|C|8
3JB9|1|P|U|9
3JB9|1|P|U|10
3JB9|1|P|U|11
3JB9|1|P|G|12
3JB9|1|P|C|13
3JB9|1|P|C|14
3JB9|1|P|U|15
3JB9|1|P|U|16
3JB9|1|P|U|17
3JB9|1|P|U|18
3JB9|1|P|G|19
3JB9|1|P|G|20
Current chains
- Chain N
- U6 snRNA
- Chain P
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor spp42
- Chain K
- Pre-mRNA-splicing factor prp5
- Chain M
- Pre-mRNA-processing protein 45
- Chain R
- Pre-mRNA-splicing factor cwf4
- Chain W
- Pre-mRNA-splicing factor cdc5
- Chain x
- unknown chain
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