J3_3JBN_014

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAAA*UUUUC*GUAAUC

Length

16 nucleotides

Bulged bases

3JBN|1|A|A|1812

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|A|G|1734
3JBN|1|A|U|1735
3JBN|1|A|A|1741
3JBN|1|A|A|1742
3JBN|1|A|A|1743
*
3JBN|1|A|U|1786
3JBN|1|A|U|1787
3JBN|1|A|U|1788
3JBN|1|A|U|1789
3JBN|1|A|C|1790
*
3JBN|1|A|G|1809
3JBN|1|A|U|1810
3JBN|1|A|A|1811
3JBN|1|A|A|1812
3JBN|1|A|U|1813
3JBN|1|A|C|1814

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein uS3

Chain N

40S ribosomal protein uS10

Chain O

40S ribosomal protein eS10

Chain T

40S ribosomal protein uS14

Chain Y

40S ribosomal protein eS19