J3_3JBN_015

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAAC*GUUG*CAUGUCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|C|113
3JBN|1|AA|A|114
3JBN|1|AA|A|115
3JBN|1|AA|A|116
3JBN|1|AA|C|117
*
3JBN|1|AA|G|160
3JBN|1|AA|U|161
3JBN|1|AA|U|162
3JBN|1|AA|G|163
*
3JBN|1|AA|C|268
3JBN|1|AA|A|269
3JBN|1|AA|U|270
3JBN|1|AA|G|271
3JBN|1|AA|U|272
3JBN|1|AA|C|273
3JBN|1|AA|G|274

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AJ

60S ribosomal protein eL8

Chain AP

60S ribosomal protein eL15

Chain Ab

60S ribosomal protein eL36