J3_3JBN_017

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAAACAAG*UUAAAA*UAUACAGUAC

Length

25 nucleotides

Bulged bases

3JBN|1|AA|A|448, 3JBN|1|AA|U|699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|G|446
3JBN|1|AA|A|447
3JBN|1|AA|A|448
3JBN|1|AA|A|449
3JBN|1|AA|A|450
3JBN|1|AA|C|451
3JBN|1|AA|A|452
3JBN|1|AA|A|453
3JBN|1|AA|G|454
*
3JBN|1|AA|U|501
3JBN|1|AA|U|502
3JBN|1|AA|A|503
3JBN|1|AA|A|504
3JBN|1|AA|A|505
3JBN|1|AA|A|506
*
3JBN|1|AA|U|692
3JBN|1|AA|A|693
3JBN|1|AA|U|694
3JBN|1|AA|A|695
3JBN|1|AA|C|696
3JBN|1|AA|A|697
3JBN|1|AA|G|698
3JBN|1|AA|U|699
3JBN|1|AA|A|700
3JBN|1|AA|C|701

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein eL28

Chain A8

60S ribosomal protein eL32

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AW

60S ribosomal protein uL22