J3_3JBN_021

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAG*CGAGUU*AUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|G|948
3JBN|1|AA|A|949
3JBN|1|AA|G|950
*
3JBN|1|AA|C|982
3JBN|1|AA|G|983
3JBN|1|AA|A|984
3JBN|1|AA|G|985
3JBN|1|AA|U|986
3JBN|1|AA|U|987
*
3JBN|1|AA|A|1010
3JBN|1|AA|U|1011
3JBN|1|AA|U|1012
3JBN|1|AA|U|1013
3JBN|1|AA|C|1014

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Ac

60S ribosomal protein eL37

Chain Ah

60S ribosomal protein eL43