J3_3JBN_029

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUAUAA*UUGAACUC*GUA

Length

18 nucleotides

Bulged bases

3JBN|1|AA|U|1855, 3JBN|1|AA|U|1965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|U|1854
3JBN|1|AA|U|1855
3JBN|1|AA|U|1856
3JBN|1|AA|A|1857
3JBN|1|AA|U|1858
3JBN|1|AA|A|1859
3JBN|1|AA|A|1860
*
3JBN|1|AA|U|1898
3JBN|1|AA|U|1899
3JBN|1|AA|G|1900
3JBN|1|AA|A|1901
3JBN|1|AA|A|1902
3JBN|1|AA|C|1903
3JBN|1|AA|U|1904
3JBN|1|AA|C|1905
*
3JBN|1|AA|G|1964
3JBN|1|AA|U|1965
3JBN|1|AA|A|1966

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Aa

60S ribosomal protein eL34

Chain Ad

60S ribosomal protein eL38