J3_3JBN_045

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAAAAG*CUAUCAC*GCAAUAGUUCUUUAA

Length

28 nucleotides

Bulged bases

3JBN|1|AA|C|3625, 3JBN|1|AA|U|3662, 3JBN|1|AA|A|3663, 3JBN|1|AA|G|3664, 3JBN|1|AA|U|3665, 3JBN|1|AA|U|3668, 3JBN|1|AA|U|3669, 3JBN|1|AA|U|3670, 3JBN|1|AA|A|3671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|U|3575
3JBN|1|AA|A|3576
3JBN|1|AA|A|3577
3JBN|1|AA|A|3578
3JBN|1|AA|A|3579
3JBN|1|AA|G|3580
*
3JBN|1|AA|C|3621
3JBN|1|AA|U|3622
3JBN|1|AA|A|3623
3JBN|1|AA|U|3624
3JBN|1|AA|C|3625
3JBN|1|AA|A|3626
3JBN|1|AA|C|3627
*
3JBN|1|AA|G|3658
3JBN|1|AA|C|3659
3JBN|1|AA|A|3660
3JBN|1|AA|A|3661
3JBN|1|AA|U|3662
3JBN|1|AA|A|3663
3JBN|1|AA|G|3664
3JBN|1|AA|U|3665
3JBN|1|AA|U|3666
3JBN|1|AA|C|3667
3JBN|1|AA|U|3668
3JBN|1|AA|U|3669
3JBN|1|AA|U|3670
3JBN|1|AA|A|3671
3JBN|1|AA|A|3672

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AK

60S ribosomal protein uL13

Chain AN

60S ribosomal protein eL14

Chain AW

60S ribosomal protein uL22