J3_3JBO_014

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAAC*GUUG*CAUGUCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|C|113
3JBO|1|AA|A|114
3JBO|1|AA|A|115
3JBO|1|AA|A|116
3JBO|1|AA|C|117
*
3JBO|1|AA|G|160
3JBO|1|AA|U|161
3JBO|1|AA|U|162
3JBO|1|AA|G|163
*
3JBO|1|AA|C|268
3JBO|1|AA|A|269
3JBO|1|AA|U|270
3JBO|1|AA|G|271
3JBO|1|AA|U|272
3JBO|1|AA|C|273
3JBO|1|AA|G|274

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AJ

60S ribosomal protein eL8

Chain AP

60S ribosomal protein eL15

Chain Ab

60S ribosomal protein eL36