J3_3JBO_020

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAG*CGAGUU*AUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|G|948
3JBO|1|AA|A|949
3JBO|1|AA|G|950
*
3JBO|1|AA|C|982
3JBO|1|AA|G|983
3JBO|1|AA|A|984
3JBO|1|AA|G|985
3JBO|1|AA|U|986
3JBO|1|AA|U|987
*
3JBO|1|AA|A|1010
3JBO|1|AA|U|1011
3JBO|1|AA|U|1012
3JBO|1|AA|U|1013
3JBO|1|AA|C|1014

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Ac

60S ribosomal protein eL37

Chain Ah

60S ribosomal protein eL43