J3_3JBO_028

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUUAUAA*UUGAACUC*GUA

Length

18 nucleotides

Bulged bases

3JBO|1|AA|U|1855, 3JBO|1|AA|U|1965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|U|1854
3JBO|1|AA|U|1855
3JBO|1|AA|U|1856
3JBO|1|AA|A|1857
3JBO|1|AA|U|1858
3JBO|1|AA|A|1859
3JBO|1|AA|A|1860
*
3JBO|1|AA|U|1898
3JBO|1|AA|U|1899
3JBO|1|AA|G|1900
3JBO|1|AA|A|1901
3JBO|1|AA|A|1902
3JBO|1|AA|C|1903
3JBO|1|AA|U|1904
3JBO|1|AA|C|1905
*
3JBO|1|AA|G|1964
3JBO|1|AA|U|1965
3JBO|1|AA|A|1966

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Aa

60S ribosomal protein eL34

Chain Ad

60S ribosomal protein eL38