J3_3JBO_042

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAAACAAGU*AUUAAAA*UAUACAGUAC

Length

27 nucleotides

Bulged bases

3JBO|1|AA|A|448, 3JBO|1|AA|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|G|446
3JBO|1|AA|A|447
3JBO|1|AA|A|448
3JBO|1|AA|A|449
3JBO|1|AA|A|450
3JBO|1|AA|C|451
3JBO|1|AA|A|452
3JBO|1|AA|A|453
3JBO|1|AA|G|454
3JBO|1|AA|U|455
*
3JBO|1|AA|A|500
3JBO|1|AA|U|501
3JBO|1|AA|U|502
3JBO|1|AA|A|503
3JBO|1|AA|A|504
3JBO|1|AA|A|505
3JBO|1|AA|A|506
*
3JBO|1|AA|U|692
3JBO|1|AA|A|693
3JBO|1|AA|U|694
3JBO|1|AA|A|695
3JBO|1|AA|C|696
3JBO|1|AA|A|697
3JBO|1|AA|G|698
3JBO|1|AA|U|699
3JBO|1|AA|A|700
3JBO|1|AA|C|701

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein eL28

Chain A8

60S ribosomal protein eL32

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AW

60S ribosomal protein uL22