J3_3JBO_043

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAUCCCCU*ACUUUCU*AAAACUGG

Length

24 nucleotides

Bulged bases

3JBO|1|AA|U|543, 3JBO|1|AA|C|585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|C|540
3JBO|1|AA|A|541
3JBO|1|AA|A|542
3JBO|1|AA|U|543
3JBO|1|AA|C|544
3JBO|1|AA|C|545
3JBO|1|AA|C|546
3JBO|1|AA|C|547
3JBO|1|AA|U|548
*
3JBO|1|AA|A|580
3JBO|1|AA|C|581
3JBO|1|AA|U|582
3JBO|1|AA|U|583
3JBO|1|AA|U|584
3JBO|1|AA|C|585
3JBO|1|AA|U|586
*
3JBO|1|AA|A|605
3JBO|1|AA|A|606
3JBO|1|AA|A|607
3JBO|1|AA|A|608
3JBO|1|AA|C|609
3JBO|1|AA|U|610
3JBO|1|AA|G|611
3JBO|1|AA|G|612

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein uL4

Chain AN

60S ribosomal protein eL14

Chain AU

60S ribosomal protein eL20